ATAC-seq
Brief

ATAC-seq (Assay for Transposase-Accessible Chromatin with high-throughput sequencing) is a new technology that utilizes DNA transposase (Tn5) to cut open DNA regions and combine with next-generation high-throughput sequencing technology to study chromatin openness. Compared with MNase-seq and DNase-seq traditionally used to study chromatin openness, ATAC-seq is the preferred method for chromatin accessibility due to its high repeatability, simple and time-saving experimental procedures and operations, and the ability to identify all open regions in the genome with only a small number of cells/tissues.

Fields
  • Gene expression regulation
  • Epigenetic heterogeneity
  • Embryonic development
  • Disease research
  • Genetic imprinting
Process
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Parameters
Product TypeSequencing StrategyRecommended Data AmountCycle
ATAC-seq

NovaSeq 6000 PE150

DNBSEQ-T7 PE150

No less than 50M readsCell samples: 40 days
Tissue samples: 55 days
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Requirements
Product TypeSampling Requirements
ATAC-seqSample types: cryopreserved cells, cryopreserved tissue, and fresh cells from animal sources

Sample demand: in each reaction, 50000 to 100000 cells/ approximately 50 mg of tissue

Sample activity: when prepared as a cell suspension, the activity is above 85%

Sample purity: need to avoid external pollution
Sample Preprocessing: pre processing shall refer to the detailed information provided by Party B
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