Hi-C Assisted Genome Assembly
Brief

Hi-C technology is derived from chromosome conformation capture technology, adopts high-throughput sequencing technology, and combines bioinformatics analysis methods to study the spatial relationship of the entire chromatin DNA in the whole genome, and obtain high-resolution chromatin three-dimensional structure information. Based on the fact that the interaction intensity between chromatin fragments in Hi-C data decreases with distance, Hi-C can be used for genome assembly, assembling chaotic gene sequences to the chromosomal level.

Fields
  • The assembly of existing genomes is enhanced
  • Genome de novo assisted assembly
Process
17、Hi-C sequencing - Hi-C assisted genome assembly.png
Parameters
Product TypeSequencing StrategyRecommended Data AmountCycle
Hi-C Assisted AssemblyNovaSeq/T7Chimeric genome: 100X
Haplotype Assembly: 100X 
60days (library construction and sequencing+standard analysis)
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Requirements
Product TypeSampling Requirements
Hi-C SequencingFor formaldehyde cross-linking of fresh tissue, one Hi-C library requires about 2-3 g of tissue, and the corresponding amount of genomic DNA is 15 μg.
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